vcfppR - Rapid Manipulation of the Variant Call Format (VCF)
The 'vcfpp.h' (<https://github.com/Zilong-Li/vcfpp>) provides an easy-to-use 'C++' 'API' of 'htslib', offering full functionality for manipulating Variant Call Format (VCF) files. The 'vcfppR' package serves as the R bindings of the 'vcfpp.h' library, enabling rapid processing of both compressed and uncompressed VCF files. Explore a range of powerful features for efficient VCF data manipulation.
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bioinformaticsfastrhtslibpopulation-geneticspopulation-genomicsvcfvcf-datavisulizationzlibbzip2xz-utilscurllibdeflatecpp
6.92 score 20 stars 35 scripts 277 downloadspcaone - Fast and Accurate Randomized Singular Value Decomposition Algorithms with 'PCAone'
Fast and Accurate Randomized Singular Value Decomposition (RSVD) methods proposed in the 'PCAone' paper by Li (2023) <https://genome.cshlp.org/content/33/9/1599>.
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matrix-factorizationpcarcppeigenrsvdsvdopenblascpp
3.73 score 6 stars 18 scripts 188 downloads