Package: vcfppR 0.7.2

vcfppR: Rapid Manipulation of the Variant Call Format (VCF)

The 'vcfpp.h' (<https://github.com/Zilong-Li/vcfpp>) provides an easy-to-use 'C++' 'API' of 'htslib', offering full functionality for manipulating Variant Call Format (VCF) files. The 'vcfppR' package serves as the R bindings of the 'vcfpp.h' library, enabling rapid processing of both compressed and uncompressed VCF files. Explore a range of powerful features for efficient VCF data manipulation.

Authors:Zilong Li [aut, cre], Bonfield, James K and Marshall, John and Danecek, Petr and Li, Heng and Ohan, Valeriu and Whitwham, Andrew and Keane, Thomas and Davies, Robert M [cph]

vcfppR_0.7.2.tar.gz
vcfppR_0.7.2.zip(r-4.5)vcfppR_0.7.2.zip(r-4.4)vcfppR_0.7.2.zip(r-4.3)
vcfppR_0.7.2.tgz(r-4.5-x86_64)vcfppR_0.7.2.tgz(r-4.5-arm64)vcfppR_0.7.2.tgz(r-4.4-x86_64)vcfppR_0.7.2.tgz(r-4.4-arm64)vcfppR_0.7.2.tgz(r-4.3-x86_64)vcfppR_0.7.2.tgz(r-4.3-arm64)
vcfppR_0.7.2.tar.gz(r-4.5-noble)vcfppR_0.7.2.tar.gz(r-4.4-noble)
vcfppR.pdf |vcfppR.html✨
vcfppR/json (API)
NEWS

# Install 'vcfppR' in R:
install.packages('vcfppR', repos = c('https://zilong-li.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/zilong-li/vcfppr/issues

Uses libs:
  • zlib– Compression library
  • bzip2– High-quality block-sorting file compressor library
  • xz-utils– XZ-format compression library
  • curl– Easy-to-use client-side URL transfer library
  • c++– GNU Standard C++ Library v3

On CRAN:

bioinformaticsfastrhtslibpopulation-geneticspopulation-genomicsvcfvcf-datavisulizationzlibbzip2xz-utilscurlcpp

6.65 score 13 stars 15 scripts 398 downloads 7 exports 1 dependencies

Last updated 3 days agofrom:fdeccd2daa. Checks:1 OK, 10 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 30 2025
R-4.5-win-x86_64NOTEJan 30 2025
R-4.5-mac-x86_64NOTEJan 30 2025
R-4.5-mac-aarch64NOTEJan 30 2025
R-4.5-linux-x86_64NOTEJan 30 2025
R-4.4-win-x86_64NOTEJan 30 2025
R-4.4-mac-x86_64NOTEJan 30 2025
R-4.4-mac-aarch64NOTEJan 30 2025
R-4.3-win-x86_64NOTEJan 30 2025
R-4.3-mac-x86_64NOTEJan 30 2025
R-4.3-mac-aarch64NOTEJan 30 2025

Exports:vcfcompvcfplotvcfpopgenvcfreadervcfsummaryvcftablevcfwriter

Dependencies:Rcpp

Assess the concordance between VCFs

Rendered fromconcordance-of-two-vcf-files.Rmdusingknitr::rmarkdownon Jan 30 2025.

Last update: 2024-05-24
Started: 2024-05-06