NEWS
vcfppR 0.8.3 (2026-03-31)
- bugfix: vcfcomp with truth being an vcftable object for stats = "r2"!
- update F1 score to allow for missing category
vcfppR 0.8.2 (2025-11-06)
- extend subset S3 function for vcftable
- vcfcomp: stats='gtgq'
- fix vcfplot
- more unit tests and examples
vcfppR 0.8.1 (2025-08-25)
- remove unused code in vcfpp.h
- vcfcomp: rename the col name "concordance" as "accuracy"
vcfppR 0.8.0 (2025-07-02)
- copy static libs into libs folder
vcfppR 0.7.6 (2025-03-31)
vcfppR 0.7.5
- fix issue #14 to handle libdeflate dependency on linux
vcfppR 0.7.4
- fix issue #13 to speedup setRegion
vcfppR 0.7.3
- enable libdeflate on linux
vcfppR 0.7.2
- make
htslib available for including and linking by other packages
vcfppR 0.7.0 (2024-12-21)
- fix parsing BCF when subsetting sample ids and the genomic region at the same time
- fix
vcfcomp with stats="nrc" when the input vectors have different length
- use the latest version of htslib v1.21
- reduce the size of installation
vcfppR 0.6.0 (2024-09-29)
- upgrade
vcfpp.h to v0.6.0
- new API
vcfreader$setRegion
- new API
vcfreader$getStatus
vcfppR 0.5.0 (2024-09-22)
- upgrade
vcfpp.h to v0.5.1
- add
bcfreader$updateSamples() function
vcfcomp: can take vcftable object as input
vcfcomp: defaults changed setid=FALSE
- bug fix
vcfppR 0.4.6 (2024-05-24)
- add
vcfplot function
- fix bug in
vcftable when FORMAT has unaligned list
- add vignette on
vcfcomp
vcfppR 0.4.5 (2024-04-08)
- add
vcfcomp function
- fix memory leaks and pass ASAN check
vcfppR 0.4.0 (2024-02-26)
- add
setid option for vcftable
- patches for upcoming Rtools on windows
vcfppR 0.3.8 (2024-01-14)
vcfppR 0.3.7
- add
vcfreader@rmFormatTag()
- add
vcfreader@samples()
vcftable supports vartype = 'sv'
vcfppR 0.3.6
- add
vcfreader::line
- remove
vcfreader::setVariant
- bug fix
setFormatStr
- more units tests
vcfppR 0.3.5 (2023-12-14)
- add vcfreader and vcfwriter
vcfppR 0.3.4
- support filters by variant ID
vcfppR 0.3.3
- use API of vcfpp.h v0.3.1
- set missing vaules in FORMAT to NA
- support filters by QUAL, FILTER and INFO
vcfppR 0.3.0
- First release using vcfpp.h v0.3.0
- add vcftable function
- add vcfsummary function
- add vcfpopgen function