Changes in version 0.8.3 (2026-03-31)                  

  - bugfix: vcfcomp with truth being an vcftable object for stats =
    "r2"!
  - update F1 score to allow for missing category

                 Changes in version 0.8.2 (2025-11-06)                  

  - extend subset S3 function for vcftable
  - vcfcomp: stats='gtgq'
  - fix vcfplot
  - more unit tests and examples

                 Changes in version 0.8.1 (2025-08-25)                  

  - remove unused code in vcfpp.h
  - vcfcomp: rename the col name "concordance" as "accuracy"

                 Changes in version 0.8.0 (2025-07-02)                  

  - copy static libs into libs folder

                 Changes in version 0.7.6 (2025-03-31)                  

  - fix CRAN notes

                        Changes in version 0.7.5                        

  - fix issue #14 to handle libdeflate dependency on linux

                        Changes in version 0.7.4                        

  - fix issue #13 to speedup setRegion

                        Changes in version 0.7.3                        

  - enable libdeflate on linux

                        Changes in version 0.7.2                        

  - make htslib available for including and linking by other packages

                 Changes in version 0.7.0 (2024-12-21)                  

  - fix parsing BCF when subsetting sample ids and the genomic region at
    the same time
  - fix vcfcomp with stats="nrc" when the input vectors have different
    length
  - use the latest version of htslib v1.21
  - reduce the size of installation

                 Changes in version 0.6.0 (2024-09-29)                  

  - upgrade vcfpp.h to v0.6.0
  - new API vcfreader$setRegion
  - new API vcfreader$getStatus

                 Changes in version 0.5.0 (2024-09-22)                  

  - upgrade vcfpp.h to v0.5.1
  - add bcfreader$updateSamples() function
  - vcfcomp: can take vcftable object as input
  - vcfcomp: defaults changed setid=FALSE
  - bug fix

                 Changes in version 0.4.6 (2024-05-24)                  

  - add vcfplot function
  - fix bug in vcftable when FORMAT has unaligned list
  - add vignette on vcfcomp

                 Changes in version 0.4.5 (2024-04-08)                  

  - add vcfcomp function
  - fix memory leaks and pass ASAN check

                 Changes in version 0.4.0 (2024-02-26)                  

  - add setid option for vcftable
  - patches for upcoming Rtools on windows

                 Changes in version 0.3.8 (2024-01-14)                  

  - fix issues on M1 Mac

                        Changes in version 0.3.7                        

  - add vcfreader@rmFormatTag()
  - add vcfreader@samples()
  - vcftable supports vartype = 'sv'

                        Changes in version 0.3.6                        

  - add vcfreader::line
  - remove vcfreader::setVariant
  - bug fix setFormatStr
  - more units tests

                 Changes in version 0.3.5 (2023-12-14)                  

  - add vcfreader and vcfwriter

                        Changes in version 0.3.4                        

  - support filters by variant ID

                        Changes in version 0.3.3                        

  - use API of vcfpp.h v0.3.1
  - set missing vaules in FORMAT to NA
  - support filters by QUAL, FILTER and INFO

                        Changes in version 0.3.0                        

  - First release using vcfpp.h v0.3.0
  - add vcftable function
  - add vcfsummary function
  - add vcfpopgen function